Aliases: mm10

Digest: 0f10d83b1050c08dd53189986f60970b92a315aa7a16a6f1

Description: The GCA_000001635.5 seqs_for_alignment_pipelines from NCBI

download	asset name:tag	asset description	asset/archive size	archive digest
	bismark_bt2_index:default	Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2	12.2GB / 6.8GB	e2c7c29354d7ef44b7112744d371c80a
	bowtie2_index:default	Genome index for bowtie, produced with bowtie-build	3.5GB / 3.1GB	5f5247d3d3cb64fe8da4966282306809
	bwa_index:default	Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index	4.5GB / 2.8GB	8d09ffd6cbd33274c4e22b633156f0de
	cellranger_reference:default	Cell Ranger custom genome reference for read alignment and gene expression quantification	15.5GB / 9.6GB	9984184e09f8a5a3ff6d483eb9dbf426
	ensembl_gtf:default	Ensembl GTF, TSS, and gene body annotation	37.8MB / 30.5MB	08f20bfebe21504d57a5a1d04f9398a2
	ensembl_rb:default	A regulatory annotation file	9.8MB / 9.8MB	72dc7b8928dcf64239b708af1e4f63a9
	fasta:default	DNA sequences in the FASTA format, indexed FASTA (produced with samtools index) and chromosome sizes file	2.6GB / 763.4MB	bfe552cb778db3777e88972ea645557d
	fasta_txome:default	cDNA sequences in the FASTA format, indexed FASTA (produced with samtools index) and chromosome sizes file	247.6MB / 51.6MB	12c7aa9f955ce32c6a7afc258ea37631
	gencode_gtf:default	GTF annotation asset which provides access to all annotated transcripts which make up an Ensembl gene set.	27.0MB / 26.2MB	ab48acef7a90c184aea1a1c9aeef200a
	hisat2_index:default	Genome index for HISAT2, produced with hisat2-build	3.8GB / 3.5GB	344c93be95e513f56290a787188ef94b
	refgene_anno:default	gene, TSS, exon, intron, and premature mRNA annotation files	19.7MB / 9.2MB	a462e06df539da897840e9cdf7802996
	salmon_partial_sa_index:default	Transcriptome index for salmon, produced with salmon index using partial selective alignment method. Preparation includes transcriptome mapping to the genome and extraction of the relevant portion out from the genome and indexing it along with the transcriptome. Recipe source -- https://github.com/COMBINE-lab/SalmonTools/blob/master/scripts/generateDecoyTranscriptome.sh	1.9GB / 802.1MB	c604d1fcd0fa1c49dbef3cac40b5194d
	salmon_sa_index:default	Transcriptome index for salmon, produced with salmon index using selective alignment method. Improves quantification accuracy compared to the regular index.	14.3GB / 12.1GB	80ed7f8aec95d76c4f2b8e2d390b1367
	star_index:default	Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate	24.4GB / 22.0GB	098d67fa889f82f0ed3ac7c61229a829
	suffixerator_index:default	Enhanced suffix array index for genomes using gt (GenomeTools) suffixerator program	25.2GB / 14.6GB	476deab636a94f999e6b984c23e49631
	tgMap:default	Transcript to gene map file, containing two columns mapping of each transcript present in the reference to the corresponding gene.	3.0MB / 716.0KB	fbae42cb7ea16780aa5fd8ce0f3596ad