mm10/salmon_partial_sa_index:default
Description: Transcriptome index for salmon, produced with salmon index using partial selective alignment method. Preparation includes transcriptome mapping to the genome and extraction of the relevant portion out from the genome and indexing it along with the transcriptome. Recipe source -- https://github.com/COMBINE-lab/SalmonTools/blob/master/scripts/generateDecoyTranscriptome.sh
Attributes
- asset_path:
salmon_partial_sa_index
- seek_keys:
- archive_digest:
c604d1fcd0fa1c49dbef3cac40b5194d
- archive_size:
802.1MB
- asset_size:
1.9GB
- asset_parents:
- asset_children:
- asset_digest:
eb150cae678e9ed871f54d7b023d0948
- legacy_archive_digest:
223b3228f77636e191f5460c1db06f2a
Asset directory contents
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http |
s3:
0f10d83b1050c08dd53189986f60970b92a315aa7a16a6f1.gtf
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http |
s3:
complete_ref_lens.bin
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s3:
ctable.bin
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s3:
ctg_offsets.bin
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s3:
decoys.txt
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s3:
duplicate_clusters.tsv
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http |
s3:
gentrome.fa
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s3:
info.json
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s3:
mphf.bin
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s3:
pos.bin
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s3:
pre_indexing.log
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s3:
rank.bin
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s3:
ref_indexing.log
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http |
s3:
refAccumLengths.bin
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s3:
reflengths.bin
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s3:
refseq.bin
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s3:
seq.bin
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s3:
versionInfo.json