mm10/cellranger_reference:default

Description: Cell Ranger custom genome reference for read alignment and gene expression quantification

Attributes

  • asset_path: cellranger_reference
  • asset_digest: 584d963aa2d6b17f5501915a292c9aca
  • seek_keys:
  • asset_parents:
  • archive_digest: 9984184e09f8a5a3ff6d483eb9dbf426
  • archive_size: 9.6GB
  • asset_size: 15.5GB
  • asset_children: None
  • legacy_archive_digest: 9a0aff6a9bb443b1514010020a1a613c

API endpoints

Asset directory contents

  • http | s3: 0f10d83b1050c08dd53189986f60970b92a315aa7a16a6f1_filtered.gtf
  • http | s3: Log.out
  • http | s3: ref/fasta/genome.fa
  • http | s3: ref/fasta/genome.fa.fai
  • http | s3: ref/genes/genes.gtf
  • http | s3: ref/pickle/genes.pickle
  • http | s3: ref/reference.json
  • http | s3: ref/star/chrLength.txt
  • http | s3: ref/star/chrName.txt
  • http | s3: ref/star/chrNameLength.txt
  • http | s3: ref/star/chrStart.txt
  • http | s3: ref/star/exonGeTrInfo.tab
  • http | s3: ref/star/exonInfo.tab
  • http | s3: ref/star/geneInfo.tab
  • http | s3: ref/star/Genome
  • http | s3: ref/star/genomeParameters.txt
  • http | s3: ref/star/SA
  • http | s3: ref/star/SAindex
  • http | s3: ref/star/sjdbInfo.txt
  • http | s3: ref/star/sjdbList.fromGTF.out.tab
  • http | s3: ref/star/sjdbList.out.tab
  • http | s3: ref/star/transcriptInfo.tab