Aliases: hg18
Digest: 9b7fd88cae1bd01bf53760fb426e2aeb299150cc64af2b01
Description: The NCBI36 reference sequence from UCSC. The individual chromosome files were concatenated prior to the asset building
Assets table
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| bismark_bt2_index:default | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 13.5GB / 15.8GB |
efdc15ce6f0381f1c878bb40ba0d00bd
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| bowtie2_index:default | Genome index for bowtie, produced with bowtie-build | 3.8GB / 3.5GB |
7917dd53f7b30a81ae0b19d312405377
|
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| bwa_index:default | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 5.1GB / 3.2GB |
acc0e38cb4bbdf3acb66e3adfefc03d4
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| cellranger_reference:default | Cell Ranger custom genome reference for read alignment and gene expression quantification | 16.5GB / 10.4GB |
850f369e92bdd5fea0bf8bbd9ce43974
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| fasta:default | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index) and chromosome sizes file | 3.0GB / 899.7MB |
087169053a7e0269b6de875a21e81773
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| fasta_txome:default | cDNA sequences in the FASTA format, indexed FASTA (produced with samtools index) and chromosome sizes file | 129.8MB / 26.4MB |
161aef37fd4d7974f7127335ac7c9cd0
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| gencode_gtf:default | GTF annotation asset which provides access to all annotated transcripts which make up an Ensembl gene set. | 18.7MB / 17.2MB |
0ef9a7aeed1efeab0ada207b27839b9e
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| hisat2_index:default | Genome index for HISAT2, produced with hisat2-build | 4.1GB / 3.9GB |
4124e7d8af0efa7cdea76181c3346524
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| star_index:default | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 26.5GB / 47.7GB |
8a2b2badd589905317d45a6748f5a873
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| suffixerator_index:default | Enhanced suffix array index for genomes using gt (GenomeTools) suffixerator program | 27.2GB / 15.7GB |
bd8689f4bcbb3b7ca4375b52d0bb275c
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