Aliases: rn6
Digest: 79168fd950d561cf5ce454dd27593c0af429b32cddce5ce9
Description: The GCA_000001895.4_Rnor_6.0_genomic from NCBI
Assets table
| download | asset name:tag | asset description | asset/archive size | archive digest |
|---|---|---|---|---|
| bismark_bt2_index:default | Genome index for Bisulfite-Seq applications, produced by bismark_genome_preparation using bowtie2 | 12.6GB / 7.0GB |
887eec5583b0cc3bb548e536ee80229f
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| bowtie2_index:default | Genome index for bowtie, produced with bowtie-build | 3.6GB / 3.3GB |
deb54d4cf97ec5d9f71bc46588dc4532
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| bwa_index:default | Genome index for Burrows-Wheeler Alignment Tool, produced with bwa index | 4.7GB / 3.0GB |
d8ef7aefb1ec1abeedb7a4864e39746d
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| ensembl_gtf:default | Ensembl GTF, TSS, and gene body annotation | 14.9MB / 11.7MB |
9f0fa74b712b2c5b29fec4f6d348fd9a
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| fasta:default | DNA sequences in the FASTA format, indexed FASTA (produced with samtools index) and chromosome sizes file | 2.7GB / 847.3MB |
5ea8822221b08f887033d7ba032f4bf0
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| fasta_txome:default | cDNA sequences in the FASTA format, indexed FASTA (produced with samtools index) and chromosome sizes file | 75.4MB / 20.2MB |
b8a457809d21ed8729078f1cfa176a2a
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| hisat2_index:default | Genome index for HISAT2, produced with hisat2-build | 3.9GB / 3.7GB |
fd63714955c7ce6aab1f130ec23d8162
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| refgene_anno:default | gene, TSS, exon, intron, and premature mRNA annotation files | 13.1MB / 5.4MB |
6cd31a96a62670b47bb5fe64d6c3f049
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| salmon_partial_sa_index:default | Transcriptome index for salmon, produced with salmon index using partial selective alignment method. Preparation includes transcriptome mapping to the genome and extraction of the relevant portion out from the genome and indexing it along with the transcriptome. Recipe source -- https://github.com/COMBINE-lab/SalmonTools/blob/master/scripts/generateDecoyTranscriptome.sh | 797.1MB / 408.3MB |
2150140e46850a07ee82479dcb767080
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| salmon_sa_index:default | Transcriptome index for salmon, produced with salmon index using selective alignment method. Improves quantification accuracy compared to the regular index. | 14.4GB / 12.5GB |
1a6cd6d3f9ed9226c6d0048408dc93dd
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| star_index:default | Genome index for STAR RNA-seq aligner, produced with STAR --runMode genomeGenerate | 25.3GB / 45.3GB |
c916d12f8be0711881524c079dc67489
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| suffixerator_index:default | Enhanced suffix array index for genomes using gt (GenomeTools) suffixerator program | 26.7GB / 15.2GB |
6b9a969a41b602e6e324c0f57666373c
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| tgMap:default | Transcript to gene map file, containing two columns mapping of each transcript present in the reference to the corresponding gene. | 869.9KB / 237.4KB |
ab394a50fe6e3673d6df9362867a032b
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