hg38/salmon_partial_sa_index:default
Description: Transcriptome index for salmon, produced with salmon index using partial selective alignment method. Preparation includes transcriptome mapping to the genome and extraction of the relevant portion out from the genome and indexing it along with the transcriptome. Recipe source -- https://github.com/COMBINE-lab/SalmonTools/blob/master/scripts/generateDecoyTranscriptome.sh
Attributes
- asset_path:
salmon_partial_sa_index
- seek_keys:
- archive_digest:
d16df614c5e8e3911182c7bae1a4e483
- archive_size:
943.4MB
- asset_size:
2.5GB
- asset_parents:
- asset_children:
- asset_digest:
7b271a9c8383046370ae882600b3c848
- legacy_archive_digest:
a485f17c13d4ee6a25452627f2daabff
Asset directory contents
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http |
s3:
2230c535660fb4774114bfa966a62f823fdb6d21acf138d4.gtf
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s3:
complete_ref_lens.bin
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s3:
ctable.bin
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s3:
ctg_offsets.bin
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s3:
decoys.txt
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s3:
duplicate_clusters.tsv
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s3:
gentrome.fa
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s3:
info.json
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s3:
mphf.bin
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s3:
pos.bin
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s3:
pre_indexing.log
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s3:
rank.bin
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s3:
ref_indexing.log
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s3:
refAccumLengths.bin
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s3:
reflengths.bin
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s3:
refseq.bin
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s3:
seq.bin
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s3:
versionInfo.json