hg19/cellranger_reference:default

Description: Cell Ranger custom genome reference for read alignment and gene expression quantification

Attributes

  • asset_path: cellranger_reference
  • asset_digest: 7dc30c8d468b8617d309118d7be59eaa
  • seek_keys:
  • asset_parents:
  • archive_digest: 4f05306bbdd4d5f3ab9d4ca79c963c04
  • archive_size: 10.7GB
  • asset_size: 18.4GB
  • asset_children: None
  • legacy_archive_digest: ca6a134e8d0303019eb89ece95948b52

API endpoints

Asset directory contents

  • http | s3: baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_filtered.gtf
  • http | s3: Log.out
  • http | s3: ref/fasta/genome.fa
  • http | s3: ref/fasta/genome.fa.fai
  • http | s3: ref/genes/genes.gtf
  • http | s3: ref/pickle/genes.pickle
  • http | s3: ref/reference.json
  • http | s3: ref/star/chrLength.txt
  • http | s3: ref/star/chrName.txt
  • http | s3: ref/star/chrNameLength.txt
  • http | s3: ref/star/chrStart.txt
  • http | s3: ref/star/exonGeTrInfo.tab
  • http | s3: ref/star/exonInfo.tab
  • http | s3: ref/star/geneInfo.tab
  • http | s3: ref/star/Genome
  • http | s3: ref/star/genomeParameters.txt
  • http | s3: ref/star/SA
  • http | s3: ref/star/SAindex
  • http | s3: ref/star/sjdbInfo.txt
  • http | s3: ref/star/sjdbList.fromGTF.out.tab
  • http | s3: ref/star/sjdbList.out.tab
  • http | s3: ref/star/transcriptInfo.tab