Version Info: Could not resolve upgrade information in the alotted time. Check for upgrades manually at https://combine-lab.github.io/salmon [2019-12-13 18:40:37.086] [jLog] [info] building index out : /project/shefflab/genomes/hg38/salmon_sa_index/default [2019-12-13 18:40:37.205] [puff::index::jointLog] [info] Running fixFasta [Step 1 of 4] : counting k-mers [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000631435.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000415118.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000448914.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000434970.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000632684.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000439842.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390567.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000452198.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390569.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000437320.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390571.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390572.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390574.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390575.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000431870.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000450276.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390578.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000451044.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390580.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390581.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000431440.2], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.727] [puff::index::jointLog] [warning] Entry with header [ENST00000390583.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633210.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000603693.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000604838.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000604446.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000604102.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000603935.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632524.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633009.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000634070.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632963.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633030.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633765.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632619.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000631871.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633010.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633159.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632968.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632473.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000631884.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632859.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000631895.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000634154.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632609.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632911.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633504.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632304.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000632542.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633968.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000634085.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000633353.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000631803.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000390584.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000390585.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000430425.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000454691.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000390588.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000414852.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000390590.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000390591.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000454908.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000604642.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000603326.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000604950.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000603077.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:37.729] [puff::index::jointLog] [warning] Entry with header [ENST00000605284.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:40.669] [puff::index::jointLog] [warning] Entry with header [ENST00000629250.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:45.662] [puff::index::jointLog] [warning] Entry with header [ENST00000632054.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:47.162] [puff::index::jointLog] [warning] Entry with header [ENST00000437226.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:40:54.854] [puff::index::jointLog] [warning] Entry with header [ENST00000626807.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:06.330] [puff::index::jointLog] [warning] Entry with header [ENST00000417283.5], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:06.330] [puff::index::jointLog] [warning] Entry with header [ENST00000465958.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:19.334] [puff::index::jointLog] [warning] Entry with header [ENST00000632342.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:19.335] [puff::index::jointLog] [warning] Entry with header [ENST00000518246.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:20.126] [puff::index::jointLog] [warning] Entry with header [ENST00000543745.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:20.231] [puff::index::jointLog] [warning] Entry with header [ENST00000473810.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:20.929] [puff::index::jointLog] [warning] Entry with header [ENST00000579054.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:21.016] [puff::index::jointLog] [warning] Entry with header [ENST00000603775.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:21.611] [puff::index::jointLog] [warning] Entry with header [ENST00000573437.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:41:21.641] [puff::index::jointLog] [warning] Entry with header [ENST00000634174.1], had length less than equal to the k-mer length of 31 (perhaps after poly-A clipping) [2019-12-13 18:49:10.287] [puff::index::jointLog] [warning] Removed 11698 transcripts that were sequence duplicates of indexed transcripts. [2019-12-13 18:49:10.287] [puff::index::jointLog] [warning] If you wish to retain duplicate transcripts, please use the `--keepDuplicates` flag [2019-12-13 18:49:10.492] [puff::index::jointLog] [info] Replaced 165046095 non-ATCG nucleotides [2019-12-13 18:49:10.492] [puff::index::jointLog] [info] Clipped poly-A tails from 1439 transcripts wrote 177607 cleaned references seqHash 256 : c1756fb43024b82a5b8e36e241ca4a80c929a709068f34268abe455a7ce60fa4 seqHash 512 : 70845f3ebeddff820cec258679907bc2cd2e2e9d19546ef6da1284dc3d82a634a2bf4c544e4ede2b5ba54524fcb798d4f5b01cc53866adbd58322e96e7e78621 nameHash 256 : 3323ffa57919053350df6fed6cbf403b27a4a1c75da3b98adba96bf2e4c371cf nameHash 512 : 848c52d665a10be5aec32a09becca6160d7873c9f061d4e76d3593dc914d447590a086416067699eabab76d0eb24c1b793d23e9d77b9e855180191fc97d35d88 [2019-12-13 18:50:38.954] [puff::index::jointLog] [info] Filter size not provided; estimating from number of distinct k-mers [2019-12-13 18:57:24.132] [puff::index::jointLog] [info] ntHll estimated 2640457023 distinct k-mers, setting filter size to 2^36 Threads = 8 Vertex length = 31 Hash functions = 5 Filter size = 68719476736 Capacity = 2 Files: /project/shefflab/genomes/hg38/salmon_sa_index/default/ref_k31_fixed.fa -------------------------------------------------------------------------------- Round 0, 0:68719476736 Pass Filling Filtering 1 1312 7769 2 2154 8 True junctions count = 22106118 False junctions count = 2987428 Hash table size = 25093546 Candidate marks count = 350582098 -------------------------------------------------------------------------------- Reallocating bifurcations time: 17 True marks count: 347154688 Edges construction time: 3497 -------------------------------------------------------------------------------- Distinct junctions = 22106118 approximateContigTotalLength: 1298055990 counters: 5265582 1203 1138 70 contig count: 36981178 element count: 3784352032 complex nodes: 5267993 size: 3784352032 # of ones in rank vector: 36981177 size: 3784352032 [2019-12-13 23:21:38.999] [puff::index::jointLog] [info] Setting the index/BinaryGfa directory /project/shefflab/genomes/hg38/salmon_sa_index/default size = 3784352032 ----------------------------------------- | Loading contigs | Time = 10.903 s ----------------------------------------- size = 3784352032 ----------------------------------------- | Loading contig boundaries | Time = 6.6178 s ----------------------------------------- Number of ones: 36981177 Number of ones per inventory item: 512 Inventory entries filled: 72229 [2019-12-13 23:22:01.843] [puff::index::jointLog] [info] Done wrapping the rank vector with a rank9sel structure. [2019-12-13 23:22:18.930] [puff::index::jointLog] [info] contig count for validation: 36981177 [2019-12-13 23:24:12.496] [puff::index::jointLog] [info] Total # of Contigs : 36981177 [2019-12-13 23:24:12.496] [puff::index::jointLog] [info] Total # of numerical Contigs : 36981177 [2019-12-13 23:29:09.298] [puff::index::jointLog] [info] Total # of segments we have position for : 36981177 [2019-12-13 23:29:12.996] [puff::index::jointLog] [info] total contig vec entries 360587850 [2019-12-13 23:29:13.002] [puff::index::jointLog] [info] bits per offset entry 29 [2019-12-13 23:30:10.965] [puff::index::jointLog] [info] there were 3457714 equivalence classes [2019-12-13 23:32:13.446] [puff::index::jointLog] [info] # segments = 36981177 [2019-12-13 23:32:13.447] [puff::index::jointLog] [info] total length = 3784352032 [2019-12-13 23:32:13.848] [puff::index::jointLog] [info] Reading the reference files ... [2019-12-13 23:34:28.436] [puff::index::jointLog] [info] positional integer width = 32 [2019-12-13 23:34:28.436] [puff::index::jointLog] [info] seqSize = 3784352032 [2019-12-13 23:34:28.436] [puff::index::jointLog] [info] rankSize = 3784352032 [2019-12-13 23:34:28.436] [puff::index::jointLog] [info] edgeVecSize = 0 [2019-12-13 23:34:28.436] [puff::index::jointLog] [info] num keys = 2674916722 [Building BooPHF] 0.778% elapsed: 0 min 2 sec remaining: 3 min 48 sec [Building BooPHF] 0.784% elapsed: 0 min 2 sec remaining: 3 min 48 sec [Building BooPHF] 0.8 % elapsed: 0 min 2 sec remaining: 3 min 47 sec [Building BooPHF] 0.803% elapsed: 0 min 2 sec remaining: 3 min 47 sec [Building BooPHF] 0.803% elapsed: 0 min 2 sec remaining: 3 min 47 sec [Building BooPHF] 0.807% elapsed: 0 min 2 sec remaining: 3 min 46 sec [Building BooPHF] 0.811% elapsed: 0 min 2 sec remaining: 3 min 46 sec [Building BooPHF] 0.812% elapsed: 0 min 2 sec remaining: 3 min 46 sec [Building BooPHF] 1.58 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 1.58 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 1.58 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 1.59 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 1.6 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 1.62 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 1.62 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 1.62 % elapsed: 0 min 3 sec remaining: 3 min 22 sec [Building BooPHF] 2.38 % elapsed: 0 min 5 sec remaining: 3 min 11 sec [Building BooPHF] 2.38 % elapsed: 0 min 5 sec remaining: 3 min 11 sec [Building BooPHF] 2.39 % elapsed: 0 min 5 sec remaining: 3 min 11 sec [Building BooPHF] 2.4 % elapsed: 0 min 5 sec remaining: 3 min 11 sec [Building BooPHF] 2.4 % elapsed: 0 min 5 sec remaining: 3 min 11 sec [Building BooPHF] 2.41 % elapsed: 0 min 5 sec remaining: 3 min 11 sec [Building BooPHF] 2.42 % elapsed: 0 min 5 sec remaining: 3 min 11 sec 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[473044008, 946088012) [2019-12-13 23:37:49.675] [puff::index::jointLog] [info] chunk 2 = [946088012, 1419132016) [2019-12-13 23:37:49.675] [puff::index::jointLog] [info] chunk 3 = [1419132016, 1892176020) [2019-12-13 23:37:49.675] [puff::index::jointLog] [info] chunk 4 = [1892176020, 2365220024) [2019-12-13 23:37:49.675] [puff::index::jointLog] [info] chunk 5 = [2365220024, 2838264028) [2019-12-13 23:37:49.675] [puff::index::jointLog] [info] chunk 6 = [2838264028, 3311308032) [2019-12-13 23:37:49.675] [puff::index::jointLog] [info] chunk 7 = [3311308032, 3784352002) [2019-12-13 23:41:41.027] [puff::index::jointLog] [info] finished populating pos vector [2019-12-13 23:41:41.027] [puff::index::jointLog] [info] writing index components [2019-12-13 23:44:09.117] [puff::index::jointLog] [info] finished writing dense pufferfish index [2019-12-13 23:44:14.682] [jLog] [info] done building index for info, total work write each : 2.331 total work inram from level 3 : 4.322 total work raw : 25.000 Bitarray 14015712960 bits (100.00 %) (array + ranks ) final hash 595728 bits (0.00 %) (nb in final hash 1773)Command completed. Elapsed time: 5:03:40. Running peak memory: 0.019GB. PID: 29510; Command: salmon; Return code: 0; Memory used: 0.019GB > `rm /project/shefflab/genomes/hg38/salmon_sa_index/default/gentrome.fa /project/shefflab/genomes/hg38/salmon_sa_index/default/decoys.txt` (9515) Command completed. Elapsed time: 0:00:00. Running peak memory: 0.019GB. PID: 9515; Command: rm; Return code: 0; Memory used: 0.0GB > `touch /project/shefflab/genomes/hg38/salmon_sa_index/default/_refgenie_build/hg38_salmon_sa_index__default.flag` (9517) Command completed. Elapsed time: 0:00:00. Running peak memory: 0.019GB. PID: 9517; Command: touch; Return code: 0; Memory used: 0.0GB > `cd /project/shefflab/genomes/hg38/salmon_sa_index/default; find . -type f -not -path './_refgenie_build*' -exec md5sum {} \; | sort -k 2 | awk '{print $1}' | md5sum` Asset digest: 8e7304a7949b86911b976dc566200b7e Default tag for 'hg38/salmon_sa_index' set to: default ### Pipeline completed. Epilogue * Elapsed time (this run): 5:14:53 * Total elapsed time (all runs): 5:17:42 * Peak memory (this run): 0.0189 GB * Pipeline completed time: 2019-12-13 18:47:11 Finished building 'salmon_sa_index' asset