### Pipeline run code and environment: * Command: `/home/mjs5kd/.local/bin/refgenie build hg38/dbsnp --files dbsnp_vcf=/project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbsnp-dbsnp_vcf --files dbsnp_tbi=/project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbsnp-dbsnp_tbi` * Compute host: udc-ba25-18 * Working dir: /sfs/qumulo/qproject/shefflab/deploy/rg.databio.org_full/rg.databio.org * Outfolder: /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbsnp/default/_refgenie_build/ * Pipeline started at: (04-07 15:35:02) elapsed: 1.0 _TIME_ ### Version log: * Python version: 3.6.6 * Pypiper dir: `/sfs/qumulo/qhome/mjs5kd/.local/lib/python3.6/site-packages/pypiper` * Pypiper version: 0.12.1 * Pipeline dir: `/sfs/qumulo/qhome/mjs5kd/.local/bin` * Pipeline version: None ### Arguments passed to pipeline: * `asset_registry_paths`: `['hg38/dbsnp']` * `assets`: `None` * `command`: `build` * `config_file`: `refgenie.yaml` * `docker`: `False` * `files`: `[['dbsnp_vcf=/project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbsnp-dbsnp_vcf'], ['dbsnp_tbi=/project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbsnp-dbsnp_tbi']]` * `genome`: `None` * `genome_config`: `None` * `genome_description`: `None` * `logdev`: `False` * `new_start`: `False` * `outfolder`: `/project/shefflab/deploy/rg.databio.org_full/genomes/data` * `params`: `None` * `recipe`: `None` * `recover`: `False` * `requirements`: `False` * `silent`: `False` * `skip_read_lock`: `False` * `tag_description`: `None` * `verbosity`: `None` * `volumes`: `None` ---------------------------------------- Target to produce: `/project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbsnp/default/_refgenie_build/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbsnp__default.flag` > `cp /project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbsnp-dbsnp_vcf /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbsnp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbSNP.gz` (8107)
Command completed. Elapsed time: 0:01:05. Running peak memory: 0.002GB. PID: 8107; Command: cp; Return code: 0; Memory used: 0.002GB > `cp /project/shefflab/www/refgenie_refgenomes.databio.org/hg38-dbsnp-dbsnp_tbi /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbsnp/default/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbSNP.gz.tbi` (9957)
Command completed. Elapsed time: 0:00:02. Running peak memory: 0.002GB. PID: 9957; Command: cp; Return code: 0; Memory used: 0.001GB > `touch /project/shefflab/deploy/rg.databio.org_full/genomes/data/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbsnp/default/_refgenie_build/2230c535660fb4774114bfa966a62f823fdb6d21acf138d4_dbsnp__default.flag` (9981)
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.002GB. PID: 9981; Command: touch; Return code: 0; Memory used: 0.0GB Asset digest: b17012507f8600ce2ff715d48368939d Default tag for '2230c535660fb4774114bfa966a62f823fdb6d21acf138d4/dbsnp' set to: default ### Pipeline completed. Epilogue * Elapsed time (this run): 0:01:15 * Total elapsed time (all runs): 0:01:07 * Peak memory (this run): 0.0018 GB * Pipeline completed time: 2021-04-07 15:36:18 Finished building 'dbsnp' asset Created alias directories: - /project/shefflab/deploy/rg.databio.org_full/genomes/alias/hg38/dbsnp/default