### Pipeline run code and environment: * Command: `/home/mjs5kd/.local/bin/refgenie build hg19/dbsnp --files dbsnp_vcf=/project/shefflab/www/refgenie_refgenomes.databio.org/hg19-dbsnp-dbsnp_vcf --files dbsnp_tbi=/project/shefflab/www/refgenie_refgenomes.databio.org/hg19-dbsnp-dbsnp_tbi` * Compute host: udc-ba25-18 * Working dir: /sfs/qumulo/qproject/shefflab/deploy/rg.databio.org_full/rg.databio.org * Outfolder: /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/dbsnp/default/_refgenie_build/ * Pipeline started at: (04-07 15:35:02) elapsed: 0.0 _TIME_ ### Version log: * Python version: 3.6.6 * Pypiper dir: `/sfs/qumulo/qhome/mjs5kd/.local/lib/python3.6/site-packages/pypiper` * Pypiper version: 0.12.1 * Pipeline dir: `/sfs/qumulo/qhome/mjs5kd/.local/bin` * Pipeline version: None ### Arguments passed to pipeline: * `asset_registry_paths`: `['hg19/dbsnp']` * `assets`: `None` * `command`: `build` * `config_file`: `refgenie.yaml` * `docker`: `False` * `files`: `[['dbsnp_vcf=/project/shefflab/www/refgenie_refgenomes.databio.org/hg19-dbsnp-dbsnp_vcf'], ['dbsnp_tbi=/project/shefflab/www/refgenie_refgenomes.databio.org/hg19-dbsnp-dbsnp_tbi']]` * `genome`: `None` * `genome_config`: `None` * `genome_description`: `None` * `logdev`: `False` * `new_start`: `False` * `outfolder`: `/project/shefflab/deploy/rg.databio.org_full/genomes/data` * `params`: `None` * `recipe`: `None` * `recover`: `False` * `requirements`: `False` * `silent`: `False` * `skip_read_lock`: `False` * `tag_description`: `None` * `verbosity`: `None` * `volumes`: `None` ---------------------------------------- Target to produce: `/project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/dbsnp/default/_refgenie_build/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_dbsnp__default.flag` > `cp /project/shefflab/www/refgenie_refgenomes.databio.org/hg19-dbsnp-dbsnp_vcf /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/dbsnp/default/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_dbSNP.gz` (8105)
Command completed. Elapsed time: 0:01:23. Running peak memory: 0.002GB. PID: 8105; Command: cp; Return code: 0; Memory used: 0.002GB > `cp /project/shefflab/www/refgenie_refgenomes.databio.org/hg19-dbsnp-dbsnp_tbi /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/dbsnp/default/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_dbSNP.gz.tbi` (10351)
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.002GB. PID: 10351; Command: cp; Return code: 0; Memory used: 0.001GB > `touch /project/shefflab/deploy/rg.databio.org_full/genomes/data/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/dbsnp/default/_refgenie_build/baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c_dbsnp__default.flag` (10355)
Command completed. Elapsed time: 0:00:00. Running peak memory: 0.002GB. PID: 10355; Command: touch; Return code: 0; Memory used: 0.0GB Asset digest: 6564a0e963d04c4f6ee34f3d6e27361d Default tag for 'baa91c8f6e2780cfd8fd1040ff37f51c379947a2a4820d6c/dbsnp' set to: default ### Pipeline completed. Epilogue * Elapsed time (this run): 0:01:29 * Total elapsed time (all runs): 0:01:23 * Peak memory (this run): 0.0018 GB * Pipeline completed time: 2021-04-07 15:36:31 Finished building 'dbsnp' asset Created alias directories: - /project/shefflab/deploy/rg.databio.org_full/genomes/alias/hg19/dbsnp/default